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2.4.

Statistical procedures

STATA 12.0 was used for statistical analysis. Multivariable Cox regression

was performed using backward selection from a model starting with all

significant (

p

0.05) variables. The assumptions of proportional hazards

were verified, and variables were tested for collinearity before

multivariable regression analysis. The predictive accuracy of prognostic

models was quantified using Harrell’s concordance index. Data were not

assessed using competing-risks methods as information about death from

other causes was not available in most cases.

3.

Results

In this Europeanmulticentre prospective study of molecular

risk stratification in NMIBC we enrolled a total of

1224 patients from ten hospitals in Denmark, Sweden,

Germany, The Netherlands, Spain, and Serbia. We obtained

sufficient amounts of RNA for RT-qPCR analysis (median

RIN 9, median carcinoma cell percentage 90%) from 750 of

1224 patients who fulfilled all the criteria for testing

(851 tumours; Supplementary Table 1,

Fig. 1

A). No signifi-

cant differences in stage and grade distribution were

observed between the excluded and included patients;

however, the frequency of large tumours was, as expected,

significantly higher in the included patient cohort

(

p

= 0.006;

x

2

test). For the included patient cohort, the

median follow-up was 28 mo (range 0–76), during which

37 progressions to MIBC occurred. A progression score was

calculated for each tumour based on the 12-gene RT-qPCR

assay, and previously defined cut-off values were applied

(cut-off

optimal

and cut-off

90% sensitivity

)

[17]

.

3.1.

12-gene progression score performance (first tumour

analysed)

We analysed the progression scores using the first tumour

included from each patient. A comparison of gene expres-

sion patterns for the 12 genes, clinical and histopathological

information, and progression score distribution is shown in

Fig. 1

B. An overview of the clinical and histopathological

characteristics for all cases stratified according to dichot-

omised progression score (cut-off

optimal

) is shown in

Table 1

. We observed a difference in tumour classification

based on the centre of origin, especially between the two

largest contributing centres, Frederiksberg and Skejby. This

may reflect a difference in patient enrolment at the different

centres. A high progression score was significantly

(

p

0.001) associated with high age, high stage, high grade,

concomitant CIS, BCG treatment, progression to MIBC, and

high EORTC risk score. Furthermore, univariate Cox regres-

sion analysis showed that stage, grade, growth pattern,

EORTC risk score, and progression score were highly

significantly associated with disease progression to MIBC

( Table 2

). Kaplan-Meier estimates of cumulative incidence

as a function of the dichotomised progression scores using

the two predefined cut-off values are shown in

Fig. 2 .

The use of continuous progression score and EORTC risk

score as variables increased the prognostic power and

predictive accuracy, so these were included as continuous

Table 1 – Clinical and histopathological information for all

patients stratified by progression score (optimal cut-off)

a

Characteristics

Progression score

p

value

Low risk

(

n

= 390)

High risk

(

n

= 360)

Clinical centre,

n

(%)

0.012

Aalborg

17 (4)

15 (4)

Barcelona

27 (7)

27 (8)

Belgrade

34 (9)

13 (4)

Erlangen

25 (6)

26 (7)

Frederiksberg

101 (26)

75 (21)

Jena

13 (3)

28 (8)

Munich

27 (7)

17 (5)

Rotterdam

15 (4)

15 (4)

Skejby

123 (32)

132 (37)

Uppsala

8 (2)

12 (3)

Median age (yr)

69

72

<

0.001

Gender,

n

(%)

0.663

Male

299 (77)

281 (78)

Female

91 (23)

79 (22)

Smoking status,

n

(%)

0.027

Current

132 (34)

92 (26)

Former

114 (29)

135 (38)

Never

47 (12)

51 (14)

Unknown

97 (25)

82 (23)

Primary tumour,

n

(%)

0.023

Yes

219 (56)

172 (48)

No

171 (44)

188 (52)

Stage,

n

(%)

<

0.001

Ta

331 (85)

201 (56)

T1

26 (7)

55 (15)

T1a

26 (7)

69 (19)

T1b

1 (0)

19 (5)

T1c

1 (0)

8 (2)

CIS

5 (1)

8 (2)

Grade (WHO 2004),

n

(%)

<

0.001

High

95 (24)

215 (60)

Low

271 (70)

136 (38)

PUNLMP

12 (3)

0 (0)

Unknown

12 (3)

9 (2)

CIS

<

0.001

Yes

31 (8)

78 (22)

No

359 (92)

282 (78)

Growth pattern,

n

(%)

0.090

Papillary

345 (88)

296 (82)

Mixed

6 (2)

11 (3)

Solid

6 (2)

11 (3)

Unknown

33 (8)

42 (12)

Size,

n

(%)

0.051

3 cm

48 (12)

65 (18)

<

3cm

230 (59)

210 (58)

Unknown

112 (29)

85 (24)

Multiplicity,

n

(%)

0.333

Single tumour

284 (73)

250 (69)

Multiple tumours

106 (27)

110 (31)

BCG treatment,

n

(%)

0.001

Yes

46 (12)

77 (21)

No

344 (88)

283 (79)

Progression to MIBC,

n

(%)

<

0.001

Yes

7 (2)

30 (8)

No

383 (98)

330 (92)

EORTC risk score,

n

(%)

<

0.001

Low (0)

146 (38)

51 (14)

Intermediate (1–6)

161 (41)

115 (32)

High (

>

6)

83 (21)

194 (54)

BCG = bacillus Calmette-Gue´rin; Cis = carcinoma in situ diagnosed any

time in the disease course; PUNLMP = papillary urothelial neoplasm of low

malignant potential;

MIBC = muscle-invasive bladder cancer;

EORTC = European Organisation for Research and Treatment of Cancer.

a

Calculations are based on the predefined optimal cut-off value for the

progression score, and based on the first tumour included for each patient in

the study. Fischer’s exact test was used except for calculation of differences

in patient age, for which a

t

test was used.

E U R O P E A N U R O L O G Y 7 2 ( 2 0 1 7 ) 4 6 1 – 4 6 9

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